After making this timing adjustment:

The results were:

After implementing the modified boost profile.  Unfortunately I was also trying to use the VisualME7Logger and managed to setup a logging config file that omitted the actual boost level from the car’s map sensor, but I did have a pressure sensor reading at the compressor housing, though it hasn’t be verified to be reading accurately yet. (COP is compressor outlet pressure, COT is compressor outlet temperature)

After revising the requested AFR for accelerator pedal position, shown immediately below:

the car was logged with the results below.

Charts show the Accelerator Pedal position, Throttle Plate angle, and AFR versus time.  I also drew in a line showing when RPM passed 3000.  All data was collected during acceleration and 3000 rpm is the first rpm row where the revised AFR is engaged.